Blog
Technical articles on sequencing, metagenomics, and deep learning.
Long-read Sequencing Revolutionizes Structural Variant Detection
How PacBio HiFi and Oxford Nanopore are transforming our ability to characterize complex genomic rearrangements in neurodevelopmental disorders.
🤖 Deep LearningTransformer Architectures for Single-Cell RNA-seq Analysis
Exploring attention mechanisms and foundation models designed to decode cellular heterogeneity from scRNA-seq data at unprecedented scale.
🦠 MetagenomicsMetagenome-Assembled Genomes from the Human Gut
Benchmarking MAG recovery pipelines across short-read and hybrid assembly strategies for profiling microbial dark matter.
🔬 NGSOptimizing ATAC-seq Peak Calling with MACS3
Practical walkthrough of chromatin accessibility analysis — from read alignment to differential peak calling with latest MACS3 features.
🤖 Deep LearningGraph Neural Networks for Protein-Protein Interaction Prediction
Applying GNNs to predict novel PPIs from multi-omics data, with applications to understanding ASD-related molecular networks.
🦠 Metagenomics16S vs Shotgun Metagenomics: When to Use What
A practical guide to choosing the right metagenomic approach for your research question, budget, and computational resources.